原著論文　2010年以降

2022年

• Data for method development of water droplet-in-oil digestion approach
  Takeshi Masuda, Norie Araki, Sumio Ohtsuki
  Journal of Proteome Method and Data in press 2023年2月
• SIRT7 suppresses energy expenditure and thermogenesis by regulating brown adipose tissue functions in mice
  Tatsuya Yoshizawa, Yoshifumi Sato, Shihab U. Sobuz, Tomoya Mizumoto, Tomonori Tsuyama, Md. Fazlul Karim, Keishi Miyata, Masayoshi Tasaki, Masaya Yamazaki, Yuichi Kariba, Norie Araki, Eiichi Araki, Shingo Kajimura, Yuichi Oike, Thomas Braun, Eva Bober, Johan Auwerx, Kazuya Yamagata
  Nature Communications 13(1) 2022年12月12日
• Water Droplet-in-Oil Digestion Method for Single-Cell Proteomics
  Takeshi Masuda, Yuma Inamori, Arisu Furukawa, Maki Yamahiro, Kazuki Momosaki, Chih-Hsiang Chang, Daiki Kobayashi, Hiroto Ohguchi, Yawara Kawano, Shingo Ito, Norie Araki, Shao-En Ong, Sumio Ohtsuki
  Analytical Chemistry 94 10329-10336 2022年7月11日（査読有）

• AT-hook DNA-binding motif-containing protein one knockdown downregulates EWS-FLI1 transcriptional activity in Ewing’s sarcoma cells
  Takao Kitagawa, Daiki Kobayashi, Byron Baron, Hajime Okita, Tatsuo Miyamoto, Rie Takai, Durga Paudel, Tohru Ohta, Yoichi Asaoka, Masayuki Tokunaga, Koji Nakagawa, Makoto Furutani-Seiki, Norie Araki, Yasuhiro Kuramitsu, Masanobu Kobayashi
  PLOS ONE 17(10) e0269077 2022年(査読有)

• Emerging roles of GALNT5 on promoting EGFR activation in cholangiocarcinoma: a mechanistic insight.
  Detarya M, Lert-itthiporn W, Mahalapbutr P, Klaewkla M, Sawanyawisuth K, Silsirivanit A, Seubwai W, Wongkham C, Araki N, Wongkham S.
  American Journal of Cancer Research 12(9):4140-4159　 2022年(査読有)

• Targeting alpha2,3-sialylated glycan in glioma stem-like cells by Maackia amurensis lectin-II: A promising strategy for glioma treatment
  Siyaporn Putthisen, Atit Silsirivanit, Orasa Panawan, Akiko Niibori-Nambu, Yuki Nishiyama-Ikeda, Prasertsri Ma-In, Sukanya Luang, Kunimasa Ohta, Kanha Muisuk, Sopit Wongkham, Norie Araki
  Experimental Cell Research 410(1) 112949-112949 2022年1月(査読有)
• Bioinformatic Prediction of Novel Signaling Pathways of Apoptosis-inducing Factor, Mitochondrion-associated 3 (AIFM3) and Their Roles in Metastasis of Cholangiocarcinoma Cells
  DARAPORN CHUA-ON, TANAKORN PROUNGVITAYA, ANCHALEE TECHASEN, TEMDUANG LIMPAIBOON, SITTIRUK ROYTRAKUL, DOUNGDEAN TUMMANATSAKUN, NORIE ARAKI, SIRIPORN PROUNGVITAYA
  Cancer Genomics - Proteomics 19(1) 35-49 2021年12月23日

2021年

• Targeting alpha2,3-sialylated glycan in glioma stem-like cells by Maackia amurensis lectin-II: a promising strategy for glioma treatment
  Siyaporn Putthisen, Atit Silsirivanit, Orasa Panawan, Akiko Niibori-Nambu, Yuki Nishiyama-Ikeda, Prasertsri Main, Sukanya Luang, Kunimasa Ohta, Kunha Muisuk, Sopit Wongkham, Norie Araki
  Experimental Cell Research 410(1) 112949-112949 2022年1月(査読有)

• EGFR-Targeted Pentacyclic Triterpene Analogues for Glioma Therapy
  Halil I. Ciftci, Mohamed O. Radwan, Belgin Sever, Ahmed K. Hamdy, Safiye Emirdag, N. Gokce Ulusoy, Ece Sozer, Mustafa Can, Nurettin Yayli, Norie Araki, Hiroshi Tateishi, Masami Otsuka, Mikako Fujita, Mehlika Diek Altintop
  International Journal of Molecular Sciences 22 10945 2021年10月(査読有)
• TCTP interactomics in NF1-associated malignant tumor cells by affinity-purification and SWATH-MS
  Daiki Kobayashi, Norie Araki
  Journal of Proteome Data and Methods 3 2021年9月(査読有)
• Purification, Characterization, and Gene Expression of Rice Endo-β-N-Acetylglucosaminidase, Endo-Os
  Megumi Maeda, Naoko Okamoto, Norie Araki, Yoshinobu Kimura
  Frontiers in Plant Science 12 2021年8月10日(査読有)

• A protocol for analyzing the protein terminome of human cancer cell line culture supernatants,
  Kazuya Tsumagari, Chih HsiangChang, Yasushi Ishihama, STAR Protocols, 2, pp. 100682, September 2021(査読有).
• Sequence-Specific Model for Predicting Peptide Collision Cross Section Values in Proteomic Ion Mobility Spectrometry, Chih-Hsiang Chang, Darien Yeung, Victor Spicer, Kosuke Ogata, Oleg Krokhin, Yasushi Ishihama, Journal of Proteome Research, 20, pp. 3600–3610, June, 2021(査読有).
• Exploringthelandscapeofectodomainsheddingbyquantitative protein terminomics, KazuyaTsumagari, Chih-Hsiang Chang, Yasushi Ishihama, iScience, 24, pp. 102259, April, 2021(査読有).
• IsolationofAcetylatedandUnmodifiedProteinN- Terminal Peptides by Strong Cation Exchange Chromatographic Separation of TrypN-Digested Peptides, Chih-Hsiang Chang, Hsin-Yi Chang, Juri Rappsilber, Yasushi Ishihama Molecular & Cellular Proteomics, 20, pp. 100003, January, 2021(査読有).
• EffectofPhosphorylationontheCollisionCrossSectionsofPeptideIons in Ion Mobility Spectrometry,Kosuke Ogata, Chih-Hsiang Chang, Yasushi Ishihama, Mass spectrometry (Tokyo, Japan), 10, pp. A0093, January, 2021(査読有).

2020年

• Kobayashi D, Araki N. Data for quantitative proteome analyses of tumor suppressor gene NF1-deficient PC12 cells during NGF induced neural differentiation using iTRAQ.  JPDM, 2020 in press
• Araki N* Application of systems biology based on the integrated proteomics for cancer research. Proteome Letters 2020, in press (査読有)
• Atit Silsirivanit, Atsushi Matsuda, Atsushi Kuno, Chikayuki Tsuruno, Tatsuya Yamaguchi, Wunchana Seubwai, Kiyohiko Angata, Karuntarat Teeravirote, Chaisiri Wongkham, Norie Araki, Sopit Wongkham, Hisashi Narimatsu. Multi-serum glycobiomarkers improves the diagnosis and prognostic prediction of cholangiocarcinoma．Clinica Chimica Acta, 2020 in press
• Mayumi Hirayama, Fan-Yan Wei, Takeshi Chujo, Shinya Oki, Maya Yakita, Daiki Kobayashi, Norie Araki, Nozomu Takahashi, Ryoji Yoshida, Hideki Nakayama, Kazuhito Tomizawa. FTO Demethylates Cyclin D1 mRNA and Controls Cell-Cycle Progression. Cell reports 31(1), 107464 – 107464, 2020
• Datarya M, Sawanyawisuth K, Aphivatanasiri C, Chuangchaiya S, Saranaruk P,  Sukprasert L, Silsirivanit A, Araki N, Wongkham S, Wongkham C. The O-GalNAcylating enzyme GALNT5 mediates carcinogenesis and progression of cholangiocarcinoma via activation of AKT/ERK signaling. Glycobiology, 2020, vol. 30, no. 5, 312–324 doi: 10.1093/glycob/cwz098　Advance Access Publication Date: 4 December 2019

2019年

• Miyake K, Baba Y, Ishimoto T, Hiyoshi Y, Iwatsuki M, Miyamoto Y, Yoshida N, Watanabe M, Ogata Y, Nagayama M, Silsirivanit A, Kobayashi D, Araki N, Baba H, Isocitrate dehydrogenase gene mutations and 2-Hydroxyglutarate accumulation in esophageal squamous cell carcinoma, Medical oncology  36(1) 11, 2019 (Northwood, London, England)   36(1) 11 Med Oncol. 2018 Nov 30;36(1):11 (9 pages). doi: 10.1007/s12032-018-1229-x.　PMID: 30506321
• Keisuke Miyake, Yoshifumi Baba, Takatsugu Ishimoto, Yukiharu Hiyoshi, Masaaki Iwatsuki, Yuji Miyamoto , Naoya Yoshida, Masayuki Watanabe, Yoko Ogata, Megumi Nagayama, Atit Silsirivanit, Daiki Kobayashi, Norie Araki, Hideo Baba   Isocitrate dehydrogenase gene mutations and 2-Hydroxyglutarate accumulation in esophageal squamous cell carcinoma,  Molecular Oncology (IF2.9) 36(1) 11, 2019 (査読有)    

• Kobayashi D, Tokuda T, Sato K, Okanishi H, Nagayama M, Hirayama M, Ohtsuki S, Araki N* Identification of a Specific Translational Machinery via TCTP–EF1A2 Interaction Regulating NF1-associated Tumor Growth by Affinity Purification and Data-independent Mass Spectrometry Acquisition (AP-DIA). Molecular & cellular proteomics  18(2) 245-262, 2019　 doi: 10.1074/mcp.RA118.001014. 　PMID: 30381327
• Daiki Kobayashi^a, Takaho Tokuda^a, Kyosuke Sato^b, Hiroki Okanishi^a, Megumi Nagayama^a, Mio Hirayama-Kurogi^c, Sumio Ohtsuki^c, Norie Araki*. Identification of a Specific Translational Machinery via TCTP–EF1A2 Interaction Regulating NF1-associated Tumor Growth by Affinity Purification and Data-independent Mass Spectrometry Acquisition (AP-DIA). Molecular & Cellular Proteomics 18(2) 245-262, 2019(査読有)     

• Moriya Y, Kawano S, Okuda S, Watanabe Y, Matsumoto M, Takami T, Kobayashi D, Yamanouchi Y, Araki N, Yoshizawa AC, Tabata T, Iwasaki M, Sugiyama N, Tanaka S, Goto S*, Ishihama Y,*  The jPOST environment: an integrated proteomics data repository and database. Nucl Acids Res 2018 Volume 47, Issue D1, 08 January 2019, Pages D1218–D1224. (IF. 11.561) (査読有)  doi: 10.1093/nar/gky899.　PMID:30295851

2018年

• Fukuda M, Yoshizawa T, Karim Md., Sobuz S, KorogiW, Kobayashi D, Okanishi H, Tasaki M, Sawa T, Sato Y, Chirifu M, Masuda T, Nakamura T, Tanoue H, Nakashima K, Kobashigawa Y, Morioka H, Bober E, Ohtsuki S, Yamagata Y, Ando Y, Oike Y, Araki N, Takeda S, Mizuta H, Yamagata K.  SIRT7 has a critical role in bone formation by regulating lysine acylation of SP7/Osterix. Nature Communications 2018 9(1) 2833 (IF: 12.353). (査読有) Nat Commun. 2018 Jul 19;9(1):2833  (14 pages). doi: 10.1038/s41467-018-05187-4.PMID:　30026585
• Morikawa T., Tsubota N, Mizuguchi S, Midorikawa U, Kobayashi D, Nagayama M, Wilson AW, Nakamura H, Kuartsu J, Araki N* Identification of a novel EphA4-vimentin activation loop involved in chemotherapy sensitivity/resistance in malignant gliomas by integrated proteomics, Nature Medicine, under revision
• Araki N*, Yabe K, Matsunaga T, Sasao A, Kobayashi D, Kinoshita H. Development of fully automated two dimensional electrophoresis devise systems and their clinical applications. Proteome Letters 2019, in press (査読有)
• Diwakar Guragain, Wunchana Seubwai, Daiki Kobayashi, Atit Silsinivanit, Kulthida Vaeteewoottacharn, Kanlayanee Sawanyawisuth, Chaisiri Wongkham, Sopit Wongkham, Norie Araki*, Ubon Cha`on*, Artesunate and chloroquine induce cytotoxic activity on cholangiocarcinoma cells via different cell death mechanisms. Cellular and Molecular Biology 64(10) 113-118, 2018 (IF 1.372) (査読有)
• Guragain D, Seubwai W, Kobayashi D, Silsinivanit A, Kulthida Vaeteewoottacharn K, Sawanyawisuth K, Wongkham C, Wongkham S, Araki N*, Cha`on U, Artesunate and chloroquine induce cytotoxic activity on cholangiocarcinoma cells via different cell death mechanisms. Cellular and Molecular Biology 64(10) 113-118, 2018, Cell Mol Biol (Noisy-le-grand). 2018 Jul 30;64(10):113-118. PMID:30084802
• Ito N, Katoh K, Kushige H, Saito Y, Umemoto T, Matsuzaki Y, Kiyonari H, Kobayashi D, Soga M, Era T, Araki N, Furuta Y, Suda T, Kida Y, and Ohta K Ribosome Incorporation into Somatic Cells Promotes Reprogramming towards Multipotency. Scientific Reports, 2018 8(1):1634. doi: 10.1038/s41598-018-20057-1. (IF. 5.23/4.122)  (査読有)
• Cho Y, Ideue T, Nagayama M, Araki N, Tani T. RBMX is a component of the centromere noncoding RNP complex involved in cohesion regulation. Genes Cells. 2018 Mar;23(3):172-184. doi: 10.1111/gtc.12562. Epub 2018 Jan 31. PMID: 29383807 (IF: 2.048/ 5Y 2.326) (査読有) Genes Cells. 2018 Mar;23(3):172-184. doi: 10.1111/gtc.12562. Epub 2018 Jan 31. PMID: 29383807
• Saentaweesuk W, Silsirivanit A, Vaeteewoottacharn K, Sawanyawisuth K, Pairojkul C, Cha'on U, Indramanee S, Pinlaor S, Boonmars T, Araki N, Wongkham C. Clinical significance of GalNAcylated glycans in cholangiocarcinoma: Values for diagnosis and prognosis. Clinica Chimica Acta. 2018 477:66-71. doi: 10.1016/j.cca.2017.12.005. (IF. 2.926) (査読有)

2017年以前

• Okuda S, Watanabe Y, Moriya Y, Kawano S, Yamamoto T, Matsumoto M, Takami T, Kobayashi D, Araki N, Yoshizawa AC, Tabata T, Sugiyama N, Goto S, Ishihama Y.  jPOSTrepo: an international standard data repository for proteomes. Nucl Acids Res 2017 in press. (IF. 11.561) (査読有) Volume 45, Issue D1, January 2017, Pages D1107–D1111, doi:10.1093/nar/gkw1080. Epub 2016 Nov 28.

• Kobayashi D, Araki N*.  Cellular biological validations of proteomics data. Proteome Letters 　2016;1(1):37-43 (査読有) https://doi.org/10.14889/jpros.1.1_37

• Izumi D, Ishimoto T, Miyake K, Sugihara H, Eto K, Sawayama H, Yasuda T, Kiyozumi Y, Kaida T, Kurashige J, Imamura Y, Hiyoshi Y, Iwatsuki M, Iwagami S, Baba Y, Sakamoto Y, Miyamoto Y, Yoshida N, Watanabe M, Takamori H, Araki N, Tan P, Baba H. CXCL12/CXCR4 Activation by Cancer-Associated Fibroblasts Promotes Integrin ß1 Clustering and Invasiveness in Gastric Cancer. Int J Cancer. 2015 Sep 28. doi: 10.1002/ijc.29864.
• Tokuda K, Kuramitsu Y, Byron B, Kitagawa T, Tokuda N, Kobayashi D, Nagayama M, Araki N, Sonoda KH, Nakamura K. Up-regulation of DRP-3 long isoform during the induction of neural progenitor cells by glutamate treatment in the ex vivo rat retina. Biochem Biophys Res Commun. 2015 Aug 7;463(4):593-9. doi: 10.1016/j.bbrc.2015.05.102.  

• Araki N*, Mizuguchi S, Nambu, NA., Midorikawa U, Nagai M, Nagayama1 M, Hirayama M, Morikawa T, Kobayashi D.  Integrated proteomics for identifying the specific signal networks and clinical targets regulated by post-translational modifications in cancer and cancer stem cells."Medical Proteomics" in Biochimica et Biophysica Acta; BBA (Proteins and Proteomics) (IF. 3.127). in press
• Kawano S*, Watanabe T, Mizuguchi S, Araki N, Katayama T and Yamaguchi A. TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model. Nucleic Acids Research 2014 42(Web Server issue):W442-8，doi: 10.1093/nar/gku403 [IF:8.8/11.521, citation:2]
• Kobayashi, D., Hirayama M., Komohara, Y., Mizuguchi, S, Wilson Morifuji, M. Patrakitkomjorn, S, Ihn, H., Takeya, M, Kuramochi, A., and Araki, N*.　Translationally Controlled Tumor Protein is a Novel Biological Target for Neurofibromatosis Type 1 (NF1)-associated Tumors. J. Biol. Chem. 2014　289(38):26314-26. doi: 10.1074/jbc.M114.568253 [IF:4.6/4.01 , citation:1]

• Hirayama M, Kobayashi D, MizuguchiS, Morikawa T, Nagayama M, Wilson MM, Nambu NA, YoshizawaA, KawanoS, and Araki N*.Integrated proteomics identified a novel activation signaling of dynein IC2-GR-COX-1 in NF1 disease model cells.  Molecular & Cellular Proteomics, 2013 12(5):1377-1394  [IF:7.3/5.232, citation:4]
• Nambu, NA., Midorikawa U, Mizuguchi S, Hide T, Nagai M, Komohara Y, Nagayama1 M, Hirayama M, Kobayashi D, Tsubota N, Takezaki T, Makino K, Nakamura H, Takeya M, Kuratsu J and Araki N*.　Glioma initiating cells form a differentiation niche via the induction of extracellular matrices and integrinαV. PLOS ONE, 2013 8(5):e59558, [IF:3.5/2.77, citation:1]
• Yamamoto T, Nakayama K, Hirano H, Tomonaga T, Ishihama Y, Yamada T, Kondo T, Kodera Y, Sato Y, Araki N, Mamitsuka H, Goshima N. Integrated View of the Human Chromosome X-centric Proteome Project. J Proteome Res. 2013;12:58-61. [IF:5.0/3.95, citation:3]
• Silsirivanit A, Araki N*, Wongkham C, Vaeteewoottacharn K, Pairojkul C, Kuwahara K, Narimatsu Y, Sawaki H, Narimatsu H, Okada S, Sakaguchi N, Wongkham S.　CA-S27: A novel Lewis A associated carbohydrate epitope is diagnostic and prognostic for cholangiocarcinoma. Cancer Sci. 2013: 104(10):1278-84. doi: 10.1111/cas.12222.   [IF:3.5/4.372, citation:3]
• Nitta H, Wada Y, Kawano Y, Murakami Y, Irie A, Taniguchi K, Kikuchi K, Yamada G, Suzuki K, Honda J, Wilson MM, Araki N, Eto M, Baba H and Imamura T.  Enhancement of human cancer cell motility and invasiveness by anaphylatoxin C5a via aberrantly expressed C5a-receptor (CD88).  Clinical Cancer Research, 2013, 19(8); 1-10 [IF:8.2/10.199, citation:6]
• Kuwano Y, Yoneda K, Kawaguchi Y, Araki N, Araki T.　The complete amino acid sequence, and enzymatic properties of an i-type lysozyme isolated from the common orient clam (Meretrix lusoria)　Bioscience Biotechnology, and Biochemistry, 2013 77(11):2269-77.    [IF:1.2/1.255, citation:1]
• Shimada, H; Nambu-Niibori, A; Wilson-Morifuji, M; Mizuguchi, S; Araki, N*; Mezaki, Y; Senoo, H; Ishikawa, K; Okamoto, O; Fujiwara, S*.　Epiplakin modifies the motility of the HeLa cells and accumulates at the outer surfaces of three-dimensional cell clusters.  J. Dermatol. 2013 40(4):249-58. [IF:2.4/2.788, citation:1]

• Irie A, Harada K, Araki N, Nishimura Y.  Phosphorylation by PKD2 at Ser171 of SET reduced its inhibitory effect on PP2A phosphatase in T cells. PLosOne, 2012, ;7(12):e51242. doi: 10.1371 [IF:3.5/2.77, citation:3]
• Sawanyawisuth1 K., Wongkham C, Riggins GJ., Wongkham S, Araki N*.　Possible involvement of Cyclophilin A processing in fumagillin-induced suppression of cholangiocarcinoma cell proliferation. Asian Pac J Cancer Prev. 2012;13:137-41. [IF:2.514, citation:1]
• Khaenam P., Niibori NM., Okada S.,, Jearanaikoon P., Araki N*, Limpaiboon T.　Contribution of RIZ1 in proliferation and migration of liver fluke-related cholangiocarcinoma cell line.  Asian Pac J Cancer Prev. 2012;13(8):4007-11. [IF:1.5/2.514, citation:2]
• SawanyawisuthK., WongkhamC., ArakiN., ZhaoQ, RigginsGJ., WongkhamS.　Serial Analysis of Gene Expression Reveals Promising Therapeutic Targets for Liver Fluke-associated Cholangiocarcinoma.  Asian Pac J Cancer Prev. 2012;13:89-93. [IF:1.5/2.514, citation:4]

• SilsirivanitA, Araki N*, Wongkham C, Pairojkul C, Narimatsu H, Kuwahara K, WongkhamS*, Sakaguchi N.　A novel serum carbohydrate marker for cholangiocarcinoma: values for diagnostic and prognostic indicators.  Cancer. 117(15):3393-403, 2011  [IF:4.9/6.537, citation:14]
• Esaki K, Terashima Y, Toda E, Yoshinaga S, Araki N, Matsushima K, Terasawa H.    Expression and purification of human FROUNT, a common cytosolicregulator of CCR2 and CCR5.  Protein Expr Purif. 2011 77(1):86-91, 2011　[IF:1.5/1.338, citation:3]

• Nambu, T; Araki, N*; Nakagawa, A; Kuniyasu, A; Kawaguchi, T; Hamada, A; Saito, H.　The Contribution of BCR-ABL-independent Activation of ERK1/2 to Acquired Imatinib Resistance in K562 Chronic Myeloid Leukemia Cells.　Cancer Science, 2010, 101(1):137-42  [IF:3.5/4.372., citation:9]